Stem-loop gra-MIR8680

Accession

MI0027646

Description

Gossypium raimondii gra-MIR8680 precursor miRNA

Sequence

ggacccucagACAGUGGAGGUAUUGUGCCUGgggugucuaugcucgcuuuuagcccuguguucuguuuccuuacucgaaggagagcccaacggguucacgaaguuuggguagcgucucgccaccaaggaaaugugagcauuuggccguccguggcuaaaacugagcauagacacucugggcacaauagcuuuacuguuugaggguccg
(((((((((((((((((((.((((((((((((((((((((((((((.(((((((((((.(((((.((((.......)))).))))).))(((((((((((...(((((...(((...)))..)))))....)))))))......))))..).)))))))).)))))))))))))))))))))))))).))))))))))))))))))).

Structure

-                   G                          c        - uguguucuguuuccuuacucgaaggagagccca    ------       -aag     gua   u 
 ggacccucagACAGUGGAG UAUUGUGCCUGgggugucuaugcucg uuuuagcc c                                 acgg      guucacg    uuugg   gcg  
 ||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |                                 ||||      |||||||    |||||   ||| c
 ccugggaguuugucauuuc auaacacgggucucacagauacgagu aaaaucgg g                                 ugcc      cgagugu    gaacc   cgc  
g                   g                          c        u -------------------------------cc    gguuua       aaag     -ac   u 

Annotation confidence Not enough data

Genome context

chr4: 62017078-62017285 [+]

Mature gra-miR8680

• Accession: MIMAT0034051
• Description: Gossypium raimondii gra-miR8680 mature miRNA
• Sequence: 11 - ACAGUGGAGGUAUUGUGCCUG - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629