Stem-loop gra-MIR8681

Accession

MI0027647

Description

Gossypium raimondii gra-MIR8681 precursor miRNA

Sequence

uguccacuaagcaguggguugaaccccaacaaugucaagguauuguccuguguacagucauggagggagagcaccucgguguagauacgacuugcaaugcucagaggagagauguugguauagcgcauaacaauaauuauggaaaucaccuacguuugggggacucgauccaucaaccuaaagcuuauaauccacauacuugcaaguacgguaccacuugagcuaccuugACAUUGUUGAGGGUCUAAUCGGcugcuugacg
.(((....(((((((.(((((.((((((((((((((((((((...((..((((((...(((.((((.......)))).)))......((((((((((..(((....)))((((((.(((......(((((......)))))......))).))))))((..((.........))..)).....................)))))))).))))).)))..))..)))))))))))))))).)))).))))).)))))))))).

Structure

u   cacu       g     a    -                uug  cu   -   agucauggagggagagcaccucgguguagaua  -        ------------------------------ugcucagaggag      u   auagcg     ca 
 guc    aagcagu gguug accc caacaaugucaaggua   uc  gug uac                                cg acuugcaa                                          agaugu ggu      cauaa  a
 |||    ||||||| ||||| |||| ||||||||||||||||   ||  ||| |||                                || ||||||||                                          |||||| |||      |||||   
 cag    uucgucG CUAAU UGGG GUUGUUACAguuccau   ag  cac aug                                gc ugaacguu                                          uuugca cca      guauu  u
g   ----       G     C    A                -cg  uu   c   --------------------------------  a        cauacaccuaauauucgaaauccaacuaccuagcucaggggg      u   cuaaag     aa 

Annotation confidence Not enough data

Genome context

chr10: 705757-706018 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from gra-MIR8681

Mature gra-miR8681

• Accession: MIMAT0034052
• Description: Gossypium raimondii gra-miR8681 mature miRNA
• Sequence: 231 - ACAUUGUUGAGGGUCUAAUCGG - 252
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629