Stem-loop gra-MIR7484c

Accession

MI0027650

Description

Gossypium raimondii gra-MIR7484c precursor miRNA

Sequence

cuccuguacuAGAAGUCGAAUUGCAUUUUGcccccuuuacucaaaaauugagcaaauuaguccuuguauguuagaucaaggaggaaaucggcccuuugguuaaaaauucuauccauuucuacuauuaaaaaauagucccuauacaucagcaugagguauacguggcauaccacguggcacugucugguuauugcguuagccacaccuguuuuuaacaguauaacuggaugaaauuuuuaauagaaaggacaaauuugcucguugauuugauguacagggauuaauuuauccauuucuugaauagaggcaaaauguaauuugauuucuaguacaagggc
.(((((((((((((((((((((((((((((((...((((.((((((((.((..((((((((((((((((((((((((((.(((.((((..(.(((((.((((((((((.((((((.((.((((.((((((((((((.((.((((.(((...))).))))((((((....)))))))).))))).((((((......))))))......))))))).)))).)).)))))).))))))))))..))))).)..)))).))).)))))))))))))))))))))))))).)).)))).)))).))))))))))))))))))))))))))))))).)))).

Structure

c    -                           ccc    c    -    u  gc                          g   g    cg c     -g          c      u  c    a       -------------------------     c  ---------------u    a   g 
 uccu guacuAGAAGUCGAAUUGCAUUUUGcc   uuua ucaa aaau ga  aaauuaguccuuguauguuagaucaa gag aaau  g ccuuu  guuaaaaauu uaucca uu uacu uuaaaaa                         auagu cc                auac uca  
 |||| |||||||||||||||||||||||||||   |||| |||| |||| ||  |||||||||||||||||||||||||| ||| ||||  | |||||  |||||||||| |||||| || |||| |||||||                         ||||| ||                |||| ||| c
 ggga caugaucuuuaguuuaauguaaaacgg   agau aguu uuua cu  uuuaauuagggacauguaguuuaguu cuc uuua  c ggaaa  uaauuuuuaa guaggu aa auga aauuuuu                         uguca gg                uaug agu  
c    a                           ---    a    c    c  -a                          g   g    aa a     ga          a      c  u    c       guccacaccgauugcguuauugguc     c  ugcaccauacggugca    g   a 

Annotation confidence Not enough data

Genome context

chr4: 60386882-60387219 [-]

Mature gra-miR7484c

• Accession: MIMAT0034055
• Description: Gossypium raimondii gra-miR7484c mature miRNA
• Sequence: 11 - AGAAGUCGAAUUGCAUUUUG - 30
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629