Stem-loop gra-MIR8684

Accession

MI0027652

Description

Gossypium raimondii gra-MIR8684 precursor miRNA

Sequence

uaugcuagaccaaagaguaaaucauuuauuucuauuaaaaauuucaucuauuuauacuauuaaaacuuggcaugguugacaaaauauguaccucuuguugacuuauaaaaaucaguuuuuaacaauagaaaugaauauauuuuauaauAGAAUGACUGGUUUACUCUUUgaucuaacau
.(((.((((.((((((((((((((.(((((.((((((((((((((((...(((((......((((((......(((((((((............)))))))))..........)))))).....))))).)))))...))))).))))))))))).)))))))))))))).)))).)))

Structure

u   c    c              u     u      -     ---     cua     acuauu      ----uggcau         aauau 
 aug uaga caaagaguaaauca uuauu cuauua aaaau   uucau   uuuau      aaaacu          gguugacaa     g
 ||| |||| |||||||||||||| ||||| |||||| |||||   |||||   |||||      ||||||          |||||||||      
 uac aucu gUUUCUCAUUUGGU AGUAA GAuaau uuuua   aagua   agaua      uuuuga          ucaguuguu     u
-   a    a              C     -      a     uau     --a     -acaau      cuaaaaauau         cucca 

Annotation confidence Not enough data

Genome context

chr1: 11357060-11357238 [-]

Mature gra-miR8684

• Accession: MIMAT0034057
• Description: Gossypium raimondii gra-miR8684 mature miRNA
• Sequence: 149 - AGAAUGACUGGUUUACUCUUU - 169
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629