Stem-loop gra-MIR8686

Accession

MI0027654

Description

Gossypium raimondii gra-MIR8686 precursor miRNA

Sequence

uacuagggacAGAGAAUGUCAGUACUAGAGGCAGcaaaaucaagaaaaaauagugaggcccuaucaugagcuguaauagcaucuguaaaaacauguauaaauacccgaacacuucuaucaauugcagcucaugauagggccccacuauuuuguauugauuccauugccucuaguacuaacauucucugucccuaguac
(((((((((((((((((((.((((((((((((((...((((((...(((((((((.(((((((((((((((((((((.(((..(((....))))))..........(((...))).....))))))))))))))))))))).)))))))))...))))))...)))))))))))))).))))))))))))))))))).

Structure

-                   C              caa      gaa         a                     -----------------------a   uc   a 
 uacuagggacAGAGAAUGU AGUACUAGAGGCAG   aaucaa   aaaauagug ggcccuaucaugagcuguaau                        gca  ugu a
 ||||||||||||||||||| ||||||||||||||   ||||||   ||||||||| |||||||||||||||||||||                        |||  |||  
 augaucccugucucuuaca ucaugaucuccguu   uuaguu   uuuuaucac ccgggauaguacucgacguua                        ugu  aca a
c                   a              acc      aug         c                     acuaucuucacaagcccauaaaua   --   a 

Annotation confidence Not enough data

Genome context

chr8: 4164151-4164348 [+]

Mature gra-miR8686

• Accession: MIMAT0034059
• Description: Gossypium raimondii gra-miR8686 mature miRNA
• Sequence: 11 - AGAGAAUGUCAGUACUAGAGGCAG - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629