miRBase entry: gra-MIR8687

Stem-loop gra-MIR8687


Accession
MI0027655
Description
Gossypium raimondii gra-MIR8687 precursor miRNA


Sequence

672 reads, 123.0 reads per million, 13 experiments
uguuuuuaagagagacaaaagaaacacguucuacaaggaacguuuucaucgaugugguauugaaaacAUGUCCUGUAAGACGUGUUUUCACuuuguuaaaauuauuuucauucugucauaaguuuuaguaucgaugauuauacagucuauaugggaauuuuuuuuuaacaaagugaaaaugagucuuacAAGGCAUGUUUUCACUGccauauuagugaaaacgugccuuguaggacgcguuuuuuguuucucucucuaaaaauaa
(((((((((((((((...(((((((.((((((((((((.((((((((((.(((((((((.((((((((((((.((((((((.(((((((((((((((((((..((((((((.((((.((((...((......))...)))))))).....))))))))....))))))))))))))))))).)))))))).)))))))))))).))))))))).)))))))))).)))))))))))).)))))))...))))))).)))))))).

Structure
-        -       caa       a            a          c         u            C        G                   --uu        ----u    c    guu  ag 
 uguuuuua agagaga   aagaaac cguucuacaagg acguuuucau gauguggua ugaaaacAUGUC UGUAAGAC UGUUUUCACuuuguuaaaa    auuuucau     cugu auaa   uu  u
 |||||||| |||||||   ||||||| |||||||||||| |||||||||| ||||||||| |||||||||||| |||||||| |||||||||||||||||||    ||||||||     |||| ||||   ||   
 auaaaaau ucucucu   uuuuuug gcaggauguucc ugcaaaagug uuauaccGU ACUUUUGUACGG Acauucug guaaaagugaaacaauuuu    uaagggua     gaca uauu   ag  a
a        c       uug       c            g          a         C            A        a                   uuuu        uaucu    -    agu  cu 


Annotation confidence Low
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Genome context
chr9: 23427974-23428238 [-]

Database links

Mature gra-miR8687-5p

Accession MIMAT0055404
Description Gossypium raimondii gra-miR8687-5p mature miRNA
Sequence 68 - AUGUCCUGUAAGACGUGUUUUCAC - 91
Evidence experimental
unknown

Mature gra-miR8687-3p

Accession MIMAT0034060
Description Gossypium raimondii gra-miR8687-3p mature miRNA
Sequence 190 - AAGGCAUGUUUUCACUG - 206
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629