Stem-loop gra-MIR8688

Accession

MI0027656

Description

Gossypium raimondii gra-MIR8688 precursor miRNA

Sequence

uuucaucagaAGAGGAUGCUUUAUAAAACUCAUAcacaagcacgaggaagaaaaaugcaguggcauuucaauauaaucaaguaauucauuuuacccaucuccaccaaagacggugaccccguuacuauaaccuucaauagaauuaggguguaacaaguuuuaguaacaagguuauugccuuuaguugagaucgauaaaacgaauuacuugauuauacuggaagaccccugugauuuuuuuccuugaacucguguaugauuuuuauaaagcaugcucaucugacgagga
((((.(((((.(((.(((((((((((((.((((((((.((..((((((((((((.(((((.((..(((((.((((((((((((((((.(((((.(.(((((.((.((((.((((((((..(((((((..(((((.(((...))))))))...........)))))))..)))))))).)))).)).))))).).))))).)))))))))))))))).)))))..)).))))).))))))))))))..)).)))))))).))))))))))))).))).))))).)))).

Structure

-    a     A   G             C        a  ca            a     u  ca     a                a     c c     c  c    a        cc       ---------ua     c   a 
 uuuc ucaga GAG AUGCUUUAUAAAA UCAUAcac ag  cgaggaagaaaa ugcag gg  uuuca uauaaucaaguaauuc uuuua c aucuc ac aaag cggugacc  guuacua           accuu aau  
 |||| ||||| ||| ||||||||||||| |||||||| ||  |||||||||||| ||||| ||  ||||| |||||||||||||||| ||||| | ||||| || |||| ||||||||  |||||||           ||||| ||| g
 ggag agucu cuc uacgaaauauuuu aguaugug uc  guuccuuuuuuu guguc cc  aaggu auauuaguucauuaag aaaau g uagag ug uuuc guuauugg  caaugau           uggga uua  
a    c     a   g             u        c  aa            a     c  ag     c                c     a c     u  a    c        aa       uuugaacaaug     -   a 

Annotation confidence Not enough data

Genome context

chr1: 11683035-11683322 [+]

Mature gra-miR8688

• Accession: MIMAT0034061
• Description: Gossypium raimondii gra-miR8688 mature miRNA
• Sequence: 11 - AGAGGAUGCUUUAUAAAACUCAUA - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629