Stem-loop gra-MIR8696

Accession

MI0027672

Description

Gossypium raimondii gra-MIR8696 precursor miRNA

Sequence

gccuaaacuaggcaacuguucccacauugggacuugaaccuuuuuuuugucuaaauuaguccuuaaacuugacaauuguuuccaugauggggccuaacuuggacuauaaaaaaauuuAGGCUCUAAUGUGGGAACGACUGCcaaguuuagg
.((((((((.((((..(((((((((((((((.((((((..(((((...((((((.((((((((.......(((....)))........)))).)))).))))))...)))))..)))))).)))))))))))))))..)))).))))))))

Structure

g        a    ac               a      cc     uuu      a    -    -uaaacuu   a 
 ccuaaacu ggca  uguucccacauuggg cuugaa  uuuuu   gucuaa uuag uccu        gac a
 |||||||| ||||  ||||||||||||||| ||||||  |||||   |||||| |||| ||||        |||  
 ggauuuga cCGU  GCAAGGGUGUAAUCU GGAuuu  aaaaa   cagguu aauc gggg        uug u
-        a    CA               C      aa     uau      c    c    uaguaccu   u 

Annotation confidence Not enough data

Genome context

chr7: 60022594-60022744 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gra-MIR8696

Mature gra-miR8696

• Accession: MIMAT0034077
• Description: Gossypium raimondii gra-miR8696 mature miRNA
• Sequence: 118 - AGGCUCUAAUGUGGGAACGACUGC - 141
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629