miRBase entry: gra-MIR8700

Stem-loop gra-MIR8700


Accession
MI0027676
Description
Gossypium raimondii gra-MIR8700 precursor miRNA


Sequence

672 reads, 157.0 reads per million, 12 experiments
aaguccuuuuagggcgacaacgguuacugugauuAAAGAACUCAUUAAUAACUACAAUUGUUGUCGCCCUGACUCGAGuuu
((.((...(((((((((((((((((...((.(((((........))))).))...)))))))))))))))))...)).)).

Structure
-  g  cuu                 acu  g     AGA 
 aa uc   uuagggcgacaacgguu   gu auuAA   A
 || ||   |||||||||||||||||   || |||||    
 uu AG   AGUCCCGCUGUUGUUAA   CA UAAUU   C
u  G  CUC                 CAU  A     ACU 


Annotation confidence Not enough data
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Genome context
chr6: 40100451-40100531 [-]

Database links

Mature gra-miR8700-5p

Accession MIMAT0034081
Description Gossypium raimondii gra-miR8700-5p mature miRNA
Sequence 35 - AAAGAACUCAUUAAUAACUACAA - 57
Evidence experimental
Illumina [1]

Mature gra-miR8700-3p

Accession MIMAT0055420
Description Gossypium raimondii gra-miR8700-3p mature miRNA
Sequence 55 - CAAUUGUUGUCGCCCUGACUCGAG - 78
Evidence experimental
unknown

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629