Stem-loop gra-MIR8705

Accession

MI0027686

Description

Gossypium raimondii gra-MIR8705 precursor miRNA

Sequence

auguucaaccAGUUCAUACUAGUUCGUGGGUCAauuagauuuuuaccucucacugaauugauaacuuauuuuguucuuaauccaaucaguccaaccaguuuagauaacauugaauuuugaucuuuuuuauauuuuuaaaauauuuuuucaaagaagucuuuauuuuuggauuuuaaaauguucuuuuuuuucauauuuuuacguuuaaaaaauauuuuuaaacauauuuguguuuaaaauaagaaaaaugauaauuuuuaauuuuaaaaaauuacguauuuuuaaaggguauaaaccaaauugacaaaaaauuguaaauguuaagaacuaaaauaguuuaaaaguuuuaaaaucgguugacacgcgaauuaaaaugaacugaucugacugaacuaaaaaauaaguugaauua
..(((((((((((((((..(((((((((.(((((((.((((((...........(((((..(((.((((((((((((((((......(((((((..(((..((((..(.(((((....(((...(((((......))))).)))..))))).)..))))..))).)))))))..(((((..((.(((((((.((((((((.......))))))))((((((((((....))))))))))..))))))).))..)))))...(((((((((........)))))))))(((....)))..(((.((((....)))).)))))))))))).))))))).)))..))))).))))))))))))).)))))))))..)))))))).((.....))............)))))))..

Structure

au       ----------------------        AC         G       a      uaccucucacu     ga   c       -         ---------------------------------------------------------------------------------------------------------------------------------------------ccaauc       cc   uu    aa a     uuuu   cuu     ua 
  guucaac                      cAGUUCAU  UAGUUCGUG GUCAauu gauuuu           gaauu  uaa uuauuuu guucuuaau                                                                                                                                                   aguccaa  agu  agau  c uugaa    gau   uuuua  u
  |||||||                      ||||||||  ||||||||| ||||||| ||||||           |||||  ||| ||||||| |||||||||                                                                                                                                                   |||||||  |||  ||||  | |||||    |||   |||||   
  uaaguug                      gucaagua  auuaagcgc caguugg cuaaaa           uuuga  auu gauaaaa caagaauug                                                                                                                                                   uuagguu  uua  ucug  g aacuu    uua   aaaau  u
au       aauaaaaaaucaagucagucua        aa         a       -      ----------u     aa   u       u         uaaauguuaaaaaacaguuaaaccaaauaugggaaauuuuuaugcauuaaaaaauuuuaauuuuuaauaguaaaaagaauaaaauuuguguuuauacaaauuuuuauaaaaaauuugcauuuuuauacuuuuuuuucuuguaaaauu       -u   uu    aa a     --uu   --u     uu 

Annotation confidence Not enough data

Genome context

chr5: 15853753-15854164 [-]

Mature gra-miR8705

• Accession: MIMAT0034091
• Description: Gossypium raimondii gra-miR8705 mature miRNA
• Sequence: 11 - AGUUCAUACUAGUUCGUGGGUCA - 33
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629