Stem-loop gra-MIR8709c

Accession

MI0027691

Description

Gossypium raimondii gra-MIR8709c precursor miRNA

Sequence

aauaucaauuAUACAUGAACUUCGAUUUAAuaugcaauuuuguacaugaacuuugauuuuggacaauuuuauaaauggcauuuugauuugaucuaauucucaaaaauuauuaacauaguuauugauauagaaucauuuuauuuuuauauauugcauacacaaauaauuauauuuauccaauauaaaaauaauuugauuauuuauuucuuuagauguacaugauuuaaucaaaauuaaaguuucauguauauaauugcauuaaaucaaaguucauggaucaaaaugcacauuaaaucaaaauucauguauaauuuugagauu
......(((((((((((((.((.((((((((.((((.(((((..(((((((((((((((....(((((.((((.((((.(((((((((((((..((((.((((.((((((....)))))).)))).....(((((..((((((((((((..((.(((....((((....))))))).))))))))))))))..)))))(((((......)))))......))))..))).)))))))))).)))).)))).)))))....)))))))))))))))...))))))))).)))))))).)).)))))))))))))........

Structure

--aauauc             C  C        a    a     -ua               ugga     u    a    c          -   cu    cucaaaaauuauuaacauaguuauugauauag     uu            au  c   caca    a 
        aauuAUACAUGAA UU GAUUUAAu ugca uuuug   caugaacuuugauuu    caauu uaua augg auuuugauuu gau  aauu                                aauca  uuauuuuuauau  ug aua    aaua u
        ||||||||||||| || |||||||| |||| |||||   |||||||||||||||    ||||| |||| |||| |||||||||| |||  ||||                                |||||  ||||||||||||  || |||    ||||  
        uuaauauguacuu aa cuaaauua acgu aaaac   guacuugaaacuaaa    guuaa auau uacu ugaaauuaaa cua  uuag                                uuagu  aauaaaaauaua  ac uau    uuau u
uuagaguu             a  a        c    -     uag               uuac     u    g    u          a   au    ----------uacauguagauuucuuuauuua     uu            --  c   ----    a 

Annotation confidence Not enough data

Genome context

chr5: 52808244-52808564 [+]

Mature gra-miR8709c

• Accession: MIMAT0034096
• Description: Gossypium raimondii gra-miR8709c mature miRNA
• Sequence: 11 - AUACAUGAACUUCGAUUUAA - 30
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629