Stem-loop gra-MIR8710a

Accession

MI0027692

Description

Gossypium raimondii gra-MIR8710a precursor miRNA

Sequence

uaucaaauuuAUACAUGAACUUUGGUCCAAugugcaauuucauaaaugagcuuuaauuauacaccuagaccucaaauugugguucaaauauauuaauggaaguuugauuuugauucaauuacacacauuuaaaaaaugaauacauacauuuauuuucauauguacggcauuacacauuagaucaaaauucauguaugcuuugauau
(((((((..((((((((((.(((((((.((((((.....(((.(((((((((((.((((........((((.((...)).)))).........)))).))))))).)))))))...........((((....(((((((((......)))))))))...)))).........)))))).))))))).)))))))))).))))))).

Structure

-       uu          C       C      ------------------------------------------------------caauu   u    -       a    -uacaccua    u  a 
 uaucaaa  uAUACAUGAA UUUGGUC AAugug                                                           uca aaau gagcuuu auua         gacc ca  
 |||||||  |||||||||| ||||||| ||||||                                                           ||| |||| ||||||| ||||         |||| || a
 auaguuu  guauguacuu aaacuag uuacac                                                           agu uuua uuugaag uaau         uugg gu  
u       -c          a       a      auuacggcauguauacuuuuauuuacauacauaaguaaaaaauuuacacacauuaacuu   -    g       g    uauauaaac    u  u 

Annotation confidence Not enough data

Genome context

chr11: 1450830-1451035 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gra-MIR8710a

Mature gra-miR8710a

• Accession: MIMAT0034097
• Description: Gossypium raimondii gra-miR8710a mature miRNA
• Sequence: 11 - AUACAUGAACUUUGGUCCAA - 30
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629