miRBase entry: gra-MIR8710b

Stem-loop gra-MIR8710b

Accession

MI0027693

Description

Gossypium raimondii gra-MIR8710b precursor miRNA

Sequence

uaucaaauuuAUACAUGAACUUUGGUCCAAuguguaauuugauacaugaacuuuaauuauacaccuagaccucgaauugugguucaaauauauaaaugaaaguuugauuuugauacaauuaacacauuuaaaaaaugaaugcauacauuuauuuucauaaguauggcauuacacauuagaucaaaauucuuguaugcuuuuauau
.........((((((.(((.(((((((.((((((((((.(.((((.((((((.(((((................))))).))))))......((((((...(((.((((.......))))))).)))))).((((((((((....)))))))))).....)))).).)))))))))).))))))).))).)))))).........

Structure

uaucaaauu      U   C       C          u g    -------------------------------------------------------------------------a      u     auacacc 
         uAUACA GAA UUUGGUC AAuguguaau u auac                                                                          ugaacu uaauu       u
         |||||| ||| ||||||| |||||||||| | ||||                                                                          |||||| |||||        
         guaugu cuu aaacuag uuacacauua g uaug                                                                          acuugg guuaa       a
uauauuuuc      u   a       a          c g    aauacuuuuauuuacauacguaaguaaaaaauuuacacaauuaacauaguuuuaguuugaaaguaaauauauaa      u     gcuccag

Annotation confidence Not enough data

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Genome context

chr11: 1456052-1456256 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gra-MIR8710b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature gra-miR8710b

Accession	MIMAT0034098
Description	Gossypium raimondii gra-miR8710b mature miRNA
Sequence	11 - AUACAUGAACUUUGGUCCAA - 30
Evidence	experimental Illumina [1]

References

PubMed ID: 24044642
Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
Xue W, Wang Z, Du M, Liu Y, Liu JY
BMC Genomics (2013) 14:629