Stem-loop gra-MIR8720

Accession

MI0027704

Description

Gossypium raimondii gra-MIR8720 precursor miRNA

Sequence

54455 reads, 13498.0 reads per million, 13 experiments

accuugcgcgCAGUGUAGUUCUAAACCCGUCGGGguugggguacaccugcacgacgugggaacacgaaauguccagaacuacaccgcaaccucgauuaguUUAGAAUUACACCACGCGCAAGgua
((((((((((..((((((((((((((..((((((((((.(((....(((.(((.((((....))))...))).)))......))).))))))))))..))))))))))))))..)))))))))).

Structure

-          CA              CC          g   --acac   c   --a    g 
 accuugcgcg  GUGUAGUUCUAAAC  GUCGGGguug ggu      cug acg   cgug g
 ||||||||||  ||||||||||||||  |||||||||| |||      ||| |||   ||||  
 ugGAACGCGC  CACAUUAAGAUUug  uagcuccaac cca      gac ugu   gcac a
a          AC              au          g   caucaa   c   aaa    a 

Annotation confidence Medium

Genome context

chr12: 1723978-1724102 [-]

Mature gra-miR8720-5p

• Accession: MIMAT0034109
• Description: Gossypium raimondii gra-miR8720-5p mature miRNA
• Sequence: 11 - CAGUGUAGUUCUAAACCCGUCGGG - 34
• Evidence: experimental ; Illumina [1]

Mature gra-miR8720-3p

• Accession: MIMAT0055438
• Description: Gossypium raimondii gra-miR8720-3p mature miRNA
• Sequence: 101 - UUAGAAUUACACCACGCGCAAG - 122
• Evidence: experimental ; unknown

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629