Stem-loop gra-MIR8721b

Accession

MI0027707

Description

Gossypium raimondii gra-MIR8721b precursor miRNA

Sequence

auguuuuaauuacaucucaaauuaucgauguuaaaucaauuagauccuucuaucauugaaaccguuaauuuuuuucauuaaaugacauguacaaucuuauaugacauaauuuaaaaugaaaauuuuaaaacggugcauaccuuuuaaaauuaaaaccuaaaaauaaaauaaaaccgaaaaaaaaagugaaugauaauuucuguaaaagcuucgaaaaccuuaaaccaagauguuuacaucauuuauuuuucuuuagaaguuucauuuuaaauuauguccuauaagaucugaugucucauuuaacauuuaaauuaaugauuuuaguaacgaaaguaccuuauugauacaaCAUCGAUAGUUUGAGGAUGUAaugaguaugu
........((((((((((((((((((((((((..((((((.((...(((.....(((((((.(((((((((......((((((((.((((.((((((((((.((((((((((((((((((((((((((((.(((....)))))))))))))..........................(((.((((((((((((.......(((((..((.((................)).))))))))))))))))))).)))......)))))))))))))))))).)))))))).)))))).)))))))).....))))))))).))))))).....)))...)).))))))..)))))))))))))))).))))))))........

Structure

auguuuua        -                aa      u  auc   cuauc       c         uuuuca        c    a  -        u                  aauuuuaaaacggugcauaccuuuuaaaauuaaaaccuaaaaauaaaauaaaaccga   a            uaauuuc     aa  u  gaaaacc 
        auuacauc ucaaauuaucgauguu  aucaau ag   cuu     auugaaa cguuaauuu      uuaaauga augu ca aucuuaua gacauaauuuaaaaugaa                                                         aaa aaaagugaauga       uguaa  gc uc       u
        |||||||| ||||||||||||||||  |||||| ||   |||     ||||||| |||||||||      |||||||| |||| || |||||||| ||||||||||||||||||                                                         ||| ||||||||||||       |||||  || ||        
        uaAUGUAG AGUUUGAUAGCUACaa  uaguua uc   gaa     ugauuuu guaauuaaa      aauuuacu ugua gu uagaauau cuguauuaaauuuuacuu                                                         uuu uuuuuauuuacu       acauu  ug ag       u
uguaugag        G                ca      u  cau   agcaa       a         -uuuac        c    -  c        c                  ---------------------------------------------------ugaaga   c            -------     --  u  aaccaaa 

Annotation confidence Not enough data

Genome context

chr5: 56870471-56870850 [-]

Mature gra-miR8721b

• Accession: MIMAT0034112
• Description: Gossypium raimondii gra-miR8721b mature miRNA
• Sequence: 350 - CAUCGAUAGUUUGAGGAUGUA - 370
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629