Stem-loop gra-MIR164a

Accession

MI0027708

Description

Gossypium raimondii gra-MIR164a precursor miRNA

Literature search

2 open access papers mention gra-MIR164a
(8 sentences)

Sequence

aggguaagccaugcuggagaagcagggcacaugcuaaaucuauuaggcaaaaauauugucuuuuauuuugCAUGUGCCUUGGCUCUCCAUCuuggaaacuc
.((((...(((.(.((((((..((((((((((((.(((..((..((((((.....))))))..)).)))))))))))))))..)))))).).)))..))))

Structure

a    aag   u c      ag            u   uc  uu      a 
 gggu   cca g uggaga  cagggcacaugc aaa  ua  aggcaa a
 ||||   ||| | ||||||  |||||||||||| |||  ||  |||||| a
 cuca   ggu C ACCUCU  GUUCCGUGUACg uuu  au  ucuguu u
-    -aa   u U      CG            -   -u  uu      a 

Annotation confidence Not enough data

Genome context

chr11: 4583737-4583837 [-]

Mature gra-miR164a

• Accession: MIMAT0034113
• Description: Gossypium raimondii gra-miR164a mature miRNA
• Sequence: 71 - CAUGUGCCUUGGCUCUCCAUC - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629