Stem-loop gra-MIR8722

Accession

MI0027709

Description

Gossypium raimondii gra-MIR8722 precursor miRNA

Sequence

3730 reads, 719.0 reads per million, 11 experiments

guugcaagaucuacuugagaagaUGAAAGGAAAAACAUGGAACUUgaggcagggcaguucaugcuccaaauacaucaaguucCAUGUUUUUCCUGUUCAUCUUCucaaguuauuuuggacggua
(((.((((((..(((((((((((((((((((((((((((((((((((....(((((.....)))))........)))))))))))))))))))).))))))))))))))).)))))))))....

Structure

----   g      cu               -                    ----ggca     g 
    guu caagau  acuugagaagaUGAA AGGAAAAACAUGGAACUUga        gggca u
    ||| ||||||  ||||||||||||||| ||||||||||||||||||||        ||||| u
    cag guuuua  ugaacuCUUCUACUU UCCUUUUUGUACcuugaacu        cucgu c
augg   -      -u               G                    acauaaac     a 

Annotation confidence Medium

Genome context

chr6: 6377888-6378011 [+]

Mature gra-miR8722-5p

• Accession: MIMAT0055443
• Description: Gossypium raimondii gra-miR8722-5p mature miRNA
• Sequence: 24 - UGAAAGGAAAAACAUGGAACUU - 45
• Evidence: experimental ; unknown

Mature gra-miR8722-3p

• Accession: MIMAT0034114
• Description: Gossypium raimondii gra-miR8722-3p mature miRNA
• Sequence: 83 - CAUGUUUUUCCUGUUCAUCUUC - 104
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629