miRBase entry: gra-MIR7492e

Stem-loop gra-MIR7492e


Accession
MI0027710
Description
Gossypium raimondii gra-MIR7492e precursor miRNA


Sequence

855 reads, 191.0 reads per million, 13 experiments
ccgcuaaaggCCAUGAUCUUUAGCGGCGUUUgcguuaaaagcgucacuaaagaccaucaucuuuagcggcguuuguaguagaagcgcugcuaaaggucaugauaucuagcgacguuuguggcaaaagugccgcUAAAGACCAUGAUCUUUAGCGGc
((((((((((.((((.(((((((((((((((((.....(((((((.(((.....(((.((((((((((((((((.......)))))))))))))))).))).....))).)))))))...)))))..)))))))))))).)))).)))))))))).

Structure
-          C    A            --     guuaa       a   aagac   c                gu 
 ccgcuaaagg CAUG UCUUUAGCGGCG  UUUgc     aagcguc cua     cau aucuuuagcggcguuu  a
 |||||||||| |||| ||||||||||||  |||||     ||||||| |||     ||| ||||||||||||||||  g
 GGCGAUUUCU GUAC AGAAAUcgccgu  aaacg     uuugcag gau     gua uggaaaucgucgcgaa  u
c          A    C            ga     --gug       c   cuaua   c                ga 


Annotation confidence Low
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Genome context
chr2: 5712439-5712594 [-]

Database links

Mature gra-miR7492e-5p

Accession MIMAT0034115
Description Gossypium raimondii gra-miR7492e-5p mature miRNA
Sequence 11 - CCAUGAUCUUUAGCGGCGUUU - 31
Evidence experimental
Illumina [1]

Mature gra-miR7492e-3p

Accession MIMAT0055444
Description Gossypium raimondii gra-miR7492e-3p mature miRNA
Sequence 134 - UAAAGACCAUGAUCUUUAGCGG - 155
Evidence experimental
unknown

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629