miRBase entry: gra-MIR8731

Stem-loop gra-MIR8731

Accession

MI0027726

Description

Gossypium raimondii gra-MIR8731 precursor miRNA

Sequence

uauuuauuugCUAUAAACAGUCGAUGGUAUCuccaucucucuaaugcuaccaccaggccggcucaggcgcugagcaaugacuccaaugccacuuucgcaaacuucucgaggcugaccuagcgguuguccugacaaaugagguuaaggaucagaagaucuuacagaacuauguuuucuaucccaacuucucuuacuagguggaggaggaggagggggggggguuaauauuauuaacuaucauaagaaugugucaacaaaaucauuuaggcacaccaguuaaaccagagucuggguuuauccaaguaacaaaauauuacuaaccuuugauguaacaauagcauuguuuuugacaugcuuaacacacagccaggcagauucugcaucacgaagcucgucauuggaauccuggagaugccaucgacuguuuguaacaaauagaau
..((((((((.((((((((((((((((((((((((....(((((((...((....))...((((((...))))))..(((((((..(((.......)))((((((((.(((.(((((....))))).))))).....)))))).((((((....))))))(((......))).......(((..(((((((..((......))..)))))))..))))))))))......((((((..........((((((..............))))))..))))))..(((((((((((.....)).(((((.......)))))..(((....(((......(((((.(((...))))))))......)))...))))))))))))....((((...)))))))))))....)))))))))))))))))))))))).))))))))..

Structure

ua        C                        ucuc       cuaccaccaggccggcucaggcgcugagcaaugacuccaaugccacuuucgcaaacuucucgaggcugaccuagcgguuguccugacaaaugagguuaaggaucagaagaucuuacagaacuauguuuucuaucccaacuucucuuacuagguggaggaggaggagggggggggguuaauauuauuaacuaucauaagaaugugucaacaaaaucauuuaggcacaccaguuaaac         gguuuauccaaguaacaaaauauuacuaa   uuga   aacaau     u   u 
  uuuauuug UAUAAACAGUCGAUGGUAUCucca    ucuaaug                                                                                                                                                                                                                                            cagagucug                             ccu    ugu      agcau guu  
  |||||||| ||||||||||||||||||||||||    |||||||                                                                                                                                                                                                                                            |||||||||                             |||    |||      ||||| ||| u
  agauaaac auguuugucagcuaccguagaggu    agguuac                                                                                                                                                                                                                                            gucuuagac                             gga    aca      ucgua cag  
ua        a                        ccua       -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ugcucgaagcacuac         -----------------------------   -ccg   cacaau     -   u

Annotation confidence Not enough data

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Genome context

chr5: 64015349-64015789 [-]

Database links

Mature gra-miR8731

Accession	MIMAT0034131
Description	Gossypium raimondii gra-miR8731 mature miRNA
Sequence	11 - CUAUAAACAGUCGAUGGUAUC - 31
Evidence	experimental Illumina [1]

References

PubMed ID: 24044642
Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
Xue W, Wang Z, Du M, Liu Y, Liu JY
BMC Genomics (2013) 14:629