miRBase entry: gra-MIR5207

Stem-loop gra-MIR5207


Accession
MI0027730
Description
Gossypium raimondii gra-MIR5207 precursor miRNA


Sequence

37467 reads, 6836.0 reads per million, 13 experiments
gaauagaaacCUUAAGGUGGGUUUGGAUGGGCGAuugggugcggugcggugcguuuaguuuacuuuuugucucacgcuacaguaucgcuacaguAUCUAAUCUCACCGCCACCGCuguuuuuacacuaaccccaaguaaacguaucgcccauccaagcucacccuaagucagaaguua
..........((((.((((((((((((((((((((((((.(((((((((((.(.((((..((((....((...((......))...))...)))).)))).).))))).))))))(((....))).....)))).........)))))))))))))))))))).))))..........

Structure
gaauagaaac    A                    ---------    --------------u      -     c u    uu    uuuu  cuc  gc 
          CUUA GGUGGGUUUGGAUGGGCGAu         uggg               gcggug cggug g uuag  uacu    gu   ac  u
          |||| ||||||||||||||||||||         ||||               |||||| ||||| | ||||  ||||    ||   ||   
          gaau ccacucgaaccuacccgcua         accc               CGCCAC GCCAC C AAUC  Auga    cg   ug  a
auugaagacu    c                    ugcaaauga    caaucacauuuuugu      C     U U    -U    -cau  cua  ac 


Annotation confidence Low
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Genome context
chr2: 55348108-55348285 [+]

Database links

Mature gra-miR5207-5p

Accession MIMAT0034135
Description Gossypium raimondii gra-miR5207-5p mature miRNA
Sequence 11 - CUUAAGGUGGGUUUGGAUGGGCGA - 34
Evidence experimental
Illumina [1]

Mature gra-miR5207-3p

Accession MIMAT0055458
Description Gossypium raimondii gra-miR5207-3p mature miRNA
Sequence 95 - AUCUAAUCUCACCGCCACCGC - 115
Evidence experimental
unknown

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629