Stem-loop gra-MIR172b

Accession

MI0027736

Description

Gossypium raimondii gra-MIR172b precursor miRNA

Literature search

2 open access papers mention gra-MIR172b
(9 sentences)

Sequence

4691960 reads, 1111962.0 reads per million, 13 experiments

guuugcugcuGCAGCAUUAUCAAGAUUCACAagaggcguuuuagggucuuuuuugauugauugaucaaucaauaagcccuuuuaugauugAGAAUCUUGAUGAUGCUGCAGUggcaaua
..((((((((((((((((((((((((((.(((....(((...((((.(((..((((((((....)))))))).)))))))...))).))).))))))))))))))))))))))))))..

Structure

gu                          A   gagg   uuu    u   uu        u 
  uugcugcuGCAGCAUUAUCAAGAUUC CAa    cgu   aggg cuu  uugauuga u
  |||||||||||||||||||||||||| |||    |||   |||| |||  ||||||||  
  aacggUGACGUCGUAGUAGUUCUAAG guu    gua   uccc gaa  aacuaacu g
au                          A   ---a   uuu    -   -u        a 

Annotation confidence High

Genome context

chr11: 59826564-59826682 [+]

Mature gra-miR172b-5p

• Accession: MIMAT0034141
• Description: Gossypium raimondii gra-miR172b-5p mature miRNA
• Sequence: 11 - GCAGCAUUAUCAAGAUUCACA - 31
• Evidence: experimental ; Illumina [1]

Mature gra-miR172b-3p

• Accession: MIMAT0055463
• Description: Gossypium raimondii gra-miR172b-3p mature miRNA
• Sequence: 91 - AGAAUCUUGAUGAUGCUGCAGU - 112
• Evidence: experimental ; unknown

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629