Stem-loop gra-MIR8771c

Accession

MI0027749

Description

Gossypium raimondii gra-MIR8771c precursor miRNA

Sequence

uguuacgaaauaaucagucuaucguuaagcuuuguaaucucacuaacgacaauccuaccaauuaggaugagaauaguuuuuccagucaaaauagaaaaaaaaaaacuaaaaaaaaaagagacgaaugauuuuucuuuuuccaguuuaauguguaauuaauuuaaaauuuucaauuaauuaaaaaauauuaucguuccaguuggacauccaauuuagcauuuaaaacucauuucggcugccacgugagauugccauUAGGGAGGUAACGAAGCUUAACGGcauaguaacc
.(((((...............((((((((((((((.(((((.((((.(.(((((.(((....(((((((((..((((((((....((......)).....))))))))....(((((((((.........)))))))))......((((((.(((((((((.((....)).)))))))))....))))))..(((..((((((....)))))).)))........))))))....)))....))).))))).).)))).))))).))))))))))))))....))))).

Structure

u     gaaauaaucagucua              a     a    c a     c   caau   ----      aauaguuuuuccagucaaaauagaaaaaaaaaaacuaaaaaaaaaagagacgaaugauuuuucuuuuuccaguu      ---g         u  a 
 guuac               ucguuaagcuuugu aucuc cuaa g caauc uac    uag    gaugag                                                                          uaaugu    uaauuaauu aa a
 |||||               |||||||||||||| ||||| |||| | ||||| |||    |||    ||||||                                                                          ||||||    ||||||||| ||  
 caaug               GGCAAUUCGAAGCA UGGAG GAUu c guuag gug    guc    uuacuc                                                                          auuaua    auuaauuaa uu u
c     -----------auac              A     G    a c     a   cacc   ggcu      ---------------------------------------aaaauuuacgauuuaaccuacagguugaccuugcu      aaaa         c  u 

Annotation confidence Not enough data

Genome context

chr13: 54359066-54359354 [+]

Mature gra-miR8771c

• Accession: MIMAT0034154
• Description: Gossypium raimondii gra-miR8771c mature miRNA
• Sequence: 256 - UAGGGAGGUAACGAAGCUUAACGG - 279
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629