Stem-loop gra-MIR8745

Accession

MI0027761

Description

Gossypium raimondii gra-MIR8745 precursor miRNA

Sequence

180 reads, 35.0 reads per million, 12 experiments

caggucggguuuUUGUUUCCCGGCUCUGUCGAGAGcccgaauugaugaaaaugggcaccauuuccuugguggcgcauggcccgauccaacuagacgcuccugcuccaugaacccugucuccagcucaggcucUCAACGGAGUUGGGAGACAAAacuccggccu
.((((((((.(((((((((((((((((((.(((((((.((.(((..((....(((..........((.((((.(((.((..((.((......))))..))))).)))).)))))..))..))).)).))))))).))))))))))))))))))).))))))))

Structure

c        u                   C       c  a   au  aaau   caccauuucc  g    c   u  cc  a  ca 
 aggucggg uuUUGUUUCCCGGCUCUGU GAGAGcc ga uug  ga    ggg          uu gugg gca gg  cg uc  a
 |||||||| ||||||||||||||||||| ||||||| || |||  ||    |||          || |||| ||| ||  || ||   
 uccggccu aAAACAGAGGGUUGAGGCA CUcucgg cu gac  cu    ccc          aa uacc cgu cc  gc ag  c
-        c                   A       a  c   cu  --gu   ----------  g    u   -  uc  -  au 

Annotation confidence Medium

Genome context

chr13: 57000135-57000297 [+]

Mature gra-miR8745-5p

• Accession: MIMAT0055485
• Description: Gossypium raimondii gra-miR8745-5p mature miRNA
• Sequence: 13 - UUGUUUCCCGGCUCUGUCGAGAG - 35
• Evidence: experimental ; unknown

Mature gra-miR8745-3p

• Accession: MIMAT0034166
• Description: Gossypium raimondii gra-miR8745-3p mature miRNA
• Sequence: 133 - UCAACGGAGUUGGGAGACAAA - 153
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629