Stem-loop gra-MIR8745

Accession

MI0027761

Description

Gossypium raimondii gra-MIR8745 precursor miRNA

Sequence

caggucggguuuuuguuucccggcucugucgagagcccgaauugaugaaaaugggcaccauuuccuugguggcgcauggcccgauccaacuagacgcuccugcuccaugaacccugucuccagcucaggcucUCAACGGAGUUGGGAGACAAAacuccggccu
.((((((((.(((((((((((((((((((.(((((((.((.(((..((....(((..........((.((((.(((.((..((.((......))))..))))).)))).)))))..))..))).)).))))))).))))))))))))))))))).))))))))

Structure

c        u                   c       c  a   au  aaau   caccauuucc  g    c   u  cc  a  ca 
 aggucggg uuuuguuucccggcucugu gagagcc ga uug  ga    ggg          uu gugg gca gg  cg uc  a
 |||||||| ||||||||||||||||||| ||||||| || |||  ||    |||          || |||| ||| ||  || ||   
 uccggccu aAAACAGAGGGUUGAGGCA CUcucgg cu gac  cu    ccc          aa uacc cgu cc  gc ag  c
-        c                   A       a  c   cu  --gu   ----------  g    u   -  uc  -  au 

Annotation confidence Not enough data

Genome context

chr13: 57000135-57000297 [+]

Mature gra-miR8745

• Accession: MIMAT0034166
• Description: Gossypium raimondii gra-miR8745 mature miRNA
• Sequence: 133 - UCAACGGAGUUGGGAGACAAA - 153
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629