Stem-loop gra-MIR8749

Accession

MI0027770

Description

Gossypium raimondii gra-MIR8749 precursor miRNA

Sequence

gggagggugaUCUCGGACCCUCAACGGAAGGuauuguucuugugucgagauuuugucucucguauuccauggagagcccaaaggguucccggaauuuaagaagcaccuugacuaauggagauaugacuuguaagcucaugggagaaaugucaauauugugcaaaauauuaauuaugcauauugcgcuugcgggaguucaaaccaccaaccaaggcuuaaaggccuuaccuuuacauccacaaaauacaagagagacaaaaucccaacacaugaacgauacuuuucguugggguuugagaccgacauuccuu
(((((.(((.((((((((((.((((((((((((((((((.(((((.(.((((((((((((((((((...((((((((((...))))))(((....(((((......)))))....))).(((((..(((.((......)).)))..))))).....((((((.(((....))).))))))..((.((((.((..((....))..))...)))))).((((((.....))))))..))))...)))))..))))))))))))).).))))).)))))))))))))))))))))))))))).).)).))))).

Structure

-     g  - a          U                  u     c a             --     cca    --------------------------------------gagcccaaaggguucccggaauuuaagaagcaccuugacuaaugga     ga   g  ag 
 gggag gu g UCUCGGACCC CAACGGAAGGuauuguuc ugugu g gauuuugucucuc  guauu   ugga                                                                                    gauau  cuu ua  c
 ||||| || | |||||||||| |||||||||||||||||| ||||| | |||||||||||||  |||||   ||||                                                                                    |||||  ||| ||   
 uccuu ca c agaguuuggg guugcuuuucauagcaag acaca c cuaaaacagagag  cauaa   accu                                                                                    cugua  gag gu  u
u     a  g c          -                  u     a c             aa     aac    acauuuccauuccggaaauucggaaccaaccaccaaacuugagggcguucgcguuauacguauuaauuauaaaacguguuauaa     aa   g  ac 

Annotation confidence Not enough data

Genome context

chr11: 60620749-60621059 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from gra-MIR8749

Mature gra-miR8749

• Accession: MIMAT0034175
• Description: Gossypium raimondii gra-miR8749 mature miRNA
• Sequence: 11 - UCUCGGACCCUCAACGGAAGG - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629