Stem-loop gra-MIR8752

Accession

MI0027774

Description

Gossypium raimondii gra-MIR8752 precursor miRNA

Sequence

acgucuuaauUGAUGGAGAUAGGUAUCUGCAggauuugagaaagauaucuauauaggacaugugaauauaauaaaauuacaggagcaccccgagauucuaccuaccaaccaaggcgcuuuuaagcaucgguuggugguuugagucguccggcauucagauaacuccauuauuauucuuacgccuuauauagacaccuucuccgaguuuugcagauacuuaucuacaccagucaagacau
..(((((.((((.((.((((((((((((((((((((((((((.(...((((((((((...(((((..(((((((.......((((...((.(((((((...(((((((((...((........))...)))))))))...))))).)).))...........)))).)))))))..))))).))))))))))...))))).)))))))))))))))))))))).)).)))).)))))..

Structure

ac     a    A  G                      -    a aua          aca     au       aauuaca    --------cac  c  -     uac         aag  gcu 
  gucuu auUG UG AGAUAGGUAUCUGCAggauuug agaa g   ucuauauagg   uguga  auaauaa       ggag           cc ga gauuc   cuaccaacc   gc   u
  ||||| |||| || |||||||||||||||||||||| |||| |   ||||||||||   |||||  |||||||       ||||           || || |||||   |||||||||   ||    
  cagaa ugac ac ucuauucauagacguuuugagc ucuu c   agauauauuc   gcauu  uauuauu       ccuc           gg cu cugag   ggugguugg   cg   u
ua     c    c  a                      c    - cac          --c     cu       ------a    aauagacuuac  c  g     uuu         cua  aau 

Annotation confidence Not enough data

Genome context

chr7: 465419-465657 [-]

Mature gra-miR8752

• Accession: MIMAT0034179
• Description: Gossypium raimondii gra-miR8752 mature miRNA
• Sequence: 11 - UGAUGGAGAUAGGUAUCUGCA - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629