Stem-loop gra-MIR8771d

Accession

MI0027777

Description

Gossypium raimondii gra-MIR8771d precursor miRNA

Sequence

guuaccuccuuaacgacaauccuacgcggcagucuaaauggguuuuaaauauaaacuuaaauguccaacuaggauaagaauaguuuuuucacucaaaacggaaaagaaaacuaaaagaaaaaggagacgaaugguuuuucuuuuccaauucaagguauaaauaauuuaaaauuuucaauuaauuaaauuuauuuaauuaaaaaaccuauucucaucccaauugguauuuaaaacucauuuggauUGCCAUGUAGGAUUGUCGUUAgugagguaaa
.(((((((.(((((((((((((((((.((((((((((((((((((((((((.............((((...((((.(((((((.(((((..........((((((((((((((..................))).))))))))))).................................((((((((....))))))))))))).))))))).))))...)))))))))))))))))))))))))))).))))))))))))))))).))))))).

Structure

g       c                 c                        uaaacuuaaaugu    cua    a       u     -------------------------------------------cacucaaaac           -   aaagaaaa 
 uuaccuc uuaacgacaauccuacg ggcagucuaaauggguuuuaaaua             ccaa   ggau agaauag uuuuu                                                     ggaaaagaaaa cua        a
 ||||||| ||||||||||||||||| ||||||||||||||||||||||||             ||||   |||| ||||||| |||||                                                     ||||||||||| |||         
 aauggag gAUUGCUGUUAGGAUGU CCGUuagguuuacucaaaauuuau             gguu   ccua ucuuauc aaaaa                                                     ccuuuucuuuu ggu        g
a       u                 A                        -------------    aac    c       c     auuaauuuauuuaaauuaauuaacuuuuaaaauuuaauaaauauggaacuuaa           u   aagcagag 

Annotation confidence Not enough data

Genome context

chr10: 33577926-33578200 [-]

Mature gra-miR8771d

• Accession: MIMAT0034182
• Description: Gossypium raimondii gra-miR8771d mature miRNA
• Sequence: 245 - UGCCAUGUAGGAUUGUCGUUA - 265
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629