Stem-loop gra-MIR8754

Accession

MI0027778

Description

Gossypium raimondii gra-MIR8754 precursor miRNA

Sequence

335 reads, 48.0 reads per million, 13 experiments

gccucgucggUGCCGCCUGACACACUGACGACACuacccauuuuucuccccaaucauucugucaucauuaccaguauguauuuuuuaaagauaccugaaaaauacggguauaccaauuuuuaaaaaaaaagaagaaaaauauauauuuucuaaugguguugucgccgugccAAGCGGCACCUCUAUUUACCUGGCg
(((..((.((((((((.((.(((..(((((((((((..................(((.(((..........))).)))..(((((((((((((((((.......))))))......))))))))))).....((((((.......))))))..)))))))))))..))).)).)))))))).......))..))).

Structure

-   uc  ------c        C  A   AC           cccauuuuucuccccaaucauucugucaucauuaccaguaugua           ------      aa 
 gcc  gu       ggUGCCGC UG CAC  UGACGACACua                                            uuuuuuaaaga      uaccug  a
 |||  ||       |||||||| || |||  |||||||||||                                            |||||||||||      ||||||  a
 CGG  CA       CCACGGCG Ac gug  gcuguuguggu                                            aaaaaauuuuu      augggc  a
g   UC  UUUAUCU        A  c   cc           ------------------aaucuuuuauauauaaaaagaagaaa           aaccau      au 

Annotation confidence Low

Genome context

chr9: 23129834-23130029 [+]

Mature gra-miR8754-5p

• Accession: MIMAT0034183
• Description: Gossypium raimondii gra-miR8754-5p mature miRNA
• Sequence: 11 - UGCCGCCUGACACACUGACGACAC - 34
• Evidence: experimental ; Illumina [1]

Mature gra-miR8754-3p

• Accession: MIMAT0055498
• Description: Gossypium raimondii gra-miR8754-3p mature miRNA
• Sequence: 172 - AAGCGGCACCUCUAUUUACCUGGC - 195
• Evidence: experimental ; unknown

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629