Stem-loop gra-MIR8755

Accession

MI0027779

Description

Gossypium raimondii gra-MIR8755 precursor miRNA

Sequence

2869 reads, 456.0 reads per million, 13 experiments

cgcuuuuacaUGGACGCGCUUUGCUGACGUGGCAuaacgcucccucagggacgcauuuuagcucguauuuuucuaguguuaggguuuuuugcauguuuagugcuuaggauuuaugaguuuaggguuuAAGAUUUUGCCACGUCAGCUAAGCgcguccacaucaacgcgu
(((.......(((((((((((.((((((((((((....((((((...)))).))(((((((((((((.....(((....)))((((((..((((.....))))..)))))))))))).))))))).........)))))))))))).))))))))))).......))).

Structure

-   uuuuaca           U            uaacgcucccucagggacgc       -      uuuuucuaguguuag      uu    g 
 cgc       UGGACGCGCUU GCUGACGUGGCA                    auuuuag cucgua               gguuuu  gcau u
 |||       ||||||||||| ||||||||||||                    ||||||| ||||||               ||||||  |||| u
 gcg       accugcgCGAA CGACUGCACCGU                    ugggauu gaguau               uuagga  cgug u
u   caacuac           U            -----------UUUAGAAuu       u      ---------------      uu    a 

Annotation confidence Medium

Genome context

chr10: 1079518-1079686 [+]

Mature gra-miR8755-5p

• Accession: MIMAT0034184
• Description: Gossypium raimondii gra-miR8755-5p mature miRNA
• Sequence: 11 - UGGACGCGCUUUGCUGACGUGGCA - 34
• Evidence: experimental ; Illumina [1]

Mature gra-miR8755-3p

• Accession: MIMAT0055499
• Description: Gossypium raimondii gra-miR8755-3p mature miRNA
• Sequence: 128 - AAGAUUUUGCCACGUCAGCUAAGC - 151
• Evidence: experimental ; unknown

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629