Stem-loop gra-MIR8674a

Accession

MI0027791

Description

Gossypium raimondii gra-MIR8674a precursor miRNA

Sequence

ccauucccaucacaucaucuaugaucucuuucuaauuauuuaaugacauuucaggaaucauuuuccauguuauugacauauaauuuuggugauuuuuuaacccugaauuuugaacccaaacuguaaaucucaaacccuaaaccucgaacccuaagcccaaguuuaagauucaauguuugggguuagaguucaagauuugaaauucgaguuugagguucaugauuuagaauuuagggucaagguucgggauuagagauuuaggguaaaaaaauuacuaaaauuaugugucaaugacauggaaaaaauuguugaaaugccauuauauaaUUAGAAAGGGACCAUGGAUGAUGUguuagaagag
...(((....(((((((((((((.(((((((((((((((.(((((.((((((((.(((..((((((((((((((((((((((((((((((((((((((.((((((((((((...(((.((((...........((((((((((((((((.((((.((((((..............)))))).)))).)))).((((((((...)))))))))))))..............)))))))...)))).)))....)))))))))))).)))))))))))))))))))))))))))))))))))))).))).)))))))).))))).))))))))))))))).)))))))))))))...)))...

Structure

cca   ccau             a               u     a        g   ca                                      a            -gaa   a    guaaaucucaa       --------------     --------------------    c    g      uuuaag 
   uuc    cacaucaucuaug ucucuuucuaauuau uaaug cauuucag aau  uuuuccauguuauugacauauaauuuuggugauuuuuu acccugaauuuu    ccc aacu           acccuaa              accuc                    gaac cuaa cccaag      a
   |||    ||||||||||||| ||||||||||||||| ||||| |||||||| |||  |||||||||||||||||||||||||||||||||||||| ||||||||||||    ||| ||||           |||||||              |||||                    |||| |||| ||||||       
   aag    gUGUAGUAGGUAC AGGGAAAGAUUaaua auuac guaaaguu uua  aaaagguacaguaacuguguauuaaaaucauuaaaaaa ugggauuuagag    ggg uugg           ugggauu              uggag                    cuug gauu ggguuu      u
gag   -auu             C               u     c        g   -a                                      a            auua   c    --------aac       uaagauuuaguacu     uuugagcuuaaaguuuagaa    a    g      guaacu 

Annotation confidence Not enough data

Genome context

chr10: 59836292-59836652 [+]

Mature gra-miR8674a

• Accession: MIMAT0034196
• Description: Gossypium raimondii gra-miR8674a mature miRNA
• Sequence: 328 - UUAGAAAGGGACCAUGGAUGAUGU - 351
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629