Stem-loop gra-MIR8765

Accession

MI0027794

Description

Gossypium raimondii gra-MIR8765 precursor miRNA

Sequence

auauggggcacuucuaacaugagcuucacugaaaaaagcuuaugaaaagcuuuuaccaaaauaucuaacgauauugguaaauccuuagaaauauugguaaagccaauauugguaaaucguuagaaauauuaguaaaagcuuuuucuaagccauuuUUAGUGGAGCUCAUGCUAGAAuuucccauga
.(((((((...(((((.((((((((((((((((((..(((((.(((((((((((((.((.((.(((((((((...((.....))(((..(((((((((...)))))))))..)))))))))))).)).)).))))))))))))).)))))..)))))))))))))))))).)))))..))))))).

Structure

a       cac     a                  aa     u             c  a  a         auugguaaaucc   ga         a 
 uaugggg   uucua caugagcuucacugaaaa  gcuua gaaaagcuuuuac aa au ucuaacgau            uua  aauauuggu  
 |||||||   ||||| ||||||||||||||||||  ||||| ||||||||||||| || || |||||||||            |||  ||||||||| a
 guacccu   AAGAU GUACUCGAGGUGAUUuuu  cgaau uuuuucgaaaaug uu ua agauugcua            aau  uuauaaccg  
a       -uu     C                  ac     c             a  a  a         ------------   gg         a 

Annotation confidence Not enough data

Genome context

chr2: 14450236-14450421 [-]

Mature gra-miR8765

• Accession: MIMAT0034199
• Description: Gossypium raimondii gra-miR8765 mature miRNA
• Sequence: 156 - UUAGUGGAGCUCAUGCUAGAA - 176
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629