Stem-loop gra-MIR482c

Accession

MI0027800

Description

Gossypium raimondii gra-MIR482c precursor miRNA

Literature search

1 open access papers mention gra-MIR482c
(7 sentences)

Sequence

5249 reads, 1323.0 reads per million, 13 experiments

ucUGGAAAUUAUAGGAAUCGCGuuuuugggaagaagcacgaucgaucugcauccgccacuaauuucUUCCCAAAACCUCCAAUUCCAAugauuuccag
.(((((((((((.(((((.(.(.(((((((((((((((.((....))))).............)))))))))))).).)..))))).)))))))))))

Structure

u           A     -C C u            -------------   c  u 
 cUGGAAAUUAU GGAAU  G G uuuugggaagaa             gca ga c
 ||||||||||| |||||  | | ||||||||||||             ||| ||  
 gaccuuuaguA CCUUA  C C AAAACCCUUcuu             cgu cu g
-           A     AC U C            uaaucaccgccua   -  a 

Annotation confidence Medium

Genome context

chr1: 8898880-8898977 [+]

Mature gra-miR482c-5p

• Accession: MIMAT0055515
• Description: Gossypium raimondii gra-miR482c-5p mature miRNA
• Sequence: 3 - UGGAAAUUAUAGGAAUCGCG - 22
• Evidence: experimental ; unknown

Mature gra-miR482c-3p

• Accession: MIMAT0034205
• Description: Gossypium raimondii gra-miR482c-3p mature miRNA
• Sequence: 67 - UUCCCAAAACCUCCAAUUCCAA - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629