Stem-loop gra-MIR8775

Accession

MI0027808

Description

Gossypium raimondii gra-MIR8775 precursor miRNA

Sequence

gagacuucaaUUGUGAGAUUGAAGCUGAUGGgaaagugguaauaaagggauccuaaaaacucgugagaaaauaguaugcaaggacuuugaaauuuuucuucacaauugcuucaagcauuccguuuuccaaauaagugguugguucuugguuauugacgggaccaaguagcuugaaugagaugaagcgugucggugggcauagauuuugugugagcauaagaaaauuuucaaagccccugaauacuauuugcucccccauuguuaguaucccccuuauuaccauuucuucaucaacuuuaaucucacaauugaagucucu
((((((((((((((((((((((((.(((((((.((((((((((((.(((((.((((........(((.(((((((((.((.((.((((((((.(((((((((((...((((((..(((((......(((......)))..(((((((((((........))))))).)))).)))))...))))))(((((....)))))........))))).....)))))).)))))))).)).)).))))))))).)))........)))).)))))..)))))))))))).))))))).)))))))))))))))))))))))).

Structure

-                        C       a            -a     c    aaacucgu   a         g  a  a        u      -----     -------------------auu      -ag     cguuuuccaaauaagugguu    -       auu 
 gagacuucaaUUGUGAGAUUGAAG UGAUGGg aagugguaauaa  gggau cuaa        gag aaauaguau ca gg cuuugaaa uuuucu     ucaca                      gcuuca   cauuc                    gguu cuugguu   g
 |||||||||||||||||||||||| ||||||| ||||||||||||  ||||| ||||        ||| ||||||||| || || |||||||| ||||||     |||||                      ||||||   |||||                    |||| |||||||    
 cucugaaguuaacacucuaauuuc acuacuu uuuaccauuauu  cccua gauu        cuc uuuaucaua gu cc gaaacuuu aaaaga     agugu                      cgaagu   guaag                    ucga gaaccag   a
u                        a       c            cc     u    guuacccc   g         a  c  c        u      auacg     guuuuagauacggguggcugug      aga     -------------------u    u       ggc 

Annotation confidence Not enough data

Genome context

chr13: 51821710-51822028 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from gra-MIR8775

Mature gra-miR8775

• Accession: MIMAT0034213
• Description: Gossypium raimondii gra-miR8775 mature miRNA
• Sequence: 11 - UUGUGAGAUUGAAGCUGAUGG - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629