Stem-loop gra-MIR8762d

Accession

MI0027809

Description

Gossypium raimondii gra-MIR8762d precursor miRNA

Sequence

aaguuaagaaUUGUUAACUUUGAUGAUGUGGCAUauauguggauuuccauguggcaauuaauugauuuuuuacaauuuuaaaaaauuguaaaaauucuuucuaaaaaauaaaaaaaauaguuaaaagauuaucaaagauauaauuuuuuuaauauuuuaaaguuuuuaaaaaauaacuaauugcuaaugcgacaagccacgugugugucaugucagcaaaguuaacaaaaauuaacuuc
(((((((...((((((((((((.(((((((((((((((((((...(((((.(((((((((...((.((((((((((((....)))))))))))).))......((((((....((((((...((((((((((.......))))))))))...))))))...))))))..........)))))))))))).))....))))))))))))))))))).))))))))))))...))))))).

Structure

-       gaa            A                   -auu  -   g         auugauuuuuuacaauuuuaaaaaauuguaaaaauucuuucua      aaaa      guu          ca 
 aaguuaa   UUGUUAACUUUG UGAUGUGGCAUauaugugg    uc cau uggcaauua                                           aaaaau    aaaaua   aaaagauuau  a
 |||||||   |||||||||||| |||||||||||||||||||    || ||| |||||||||                                           ||||||    ||||||   ||||||||||  a
 uucaauu   aacaauugaaac acuguacugugugugcacc    ag gua aucguuaau                                           uuuuug    uuuuau   uuuuuuaaua  g
c       aaa            g                   gaac  c   -         ---------------------------------caauaaaaaa      -aaa      aau          ua 

Annotation confidence Not enough data

Genome context

chr8: 53253449-53253687 [-]

Mature gra-miR8762d

• Accession: MIMAT0034214
• Description: Gossypium raimondii gra-miR8762d mature miRNA
• Sequence: 11 - UUGUUAACUUUGAUGAUGUGGCAU - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629