miRBase entry: gra-MIR7484k

Stem-loop gra-MIR7484k


Accession
MI0027813
Description
Gossypium raimondii gra-MIR7484k precursor miRNA


Sequence

1694 reads, 295.0 reads per million, 13 experiments
caaauuagucUUUAUACAUUAGAUCAAAGAGCAAauuaauccuguuaaaaauucuauccauguauacgguuaaaaacagguuacuauaucucagcaugaguacacggaacauaccacaugucauuauaugauuauucugucagccauuucaguuucuaacaguacaaaaggAUGAAAUUUUUAACAGAAaugaucaauuugcucuuuagucuagcauauagggaucaauuugu
((((((.(((((((((..((((((.((((((((((((.(((((((((((((((.(((((.(((((...((((.((((((((......))))....(((.((..((((((.......(((((....)))))....))))))..)))))....)))).)))).)))))...))))).))))))))))))....))).)))))))))))).))))))..))))))))).)))))).

Structure
-      a         CA      C            a   ----            c     --a     acg    a    agguuacuauaucucagc   a  ac      cauacca     c 
 caaauu gucUUUAUA  UUAGAU AAAGAGCAAauu auc    cuguuaaaaauu uaucc   uguau   guua aaac                  aug gu  acggaa       caugu a
 |||||| |||||||||  |||||| |||||||||||| |||    |||||||||||| |||||   |||||   |||| ||||                  ||| ||  ||||||       |||||  
 guuuaa uagggauau  gaucug uuucucguuuaa uag    GACAAUUUUUAA GUAgg   acaug   caau uuug                  uac cg  ugucuu       guaua u
u      c         ac      a            c   uaAA            A     aaa     --a    c    --------------acuu   -  ac      ---auua     u 


Annotation confidence Low
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Genome context
chr4: 721204-721436 [+]

Database links

Mature gra-miR7484k-5p

Accession MIMAT0034218
Description Gossypium raimondii gra-miR7484k-5p mature miRNA
Sequence 11 - UUUAUACAUUAGAUCAAAGAGCAA - 34
Evidence experimental
Illumina [1]

Mature gra-miR7484k-3p

Accession MIMAT0055525
Description Gossypium raimondii gra-miR7484k-3p mature miRNA
Sequence 172 - AUGAAAUUUUUAACAGAA - 189
Evidence experimental
unknown

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629