miRBase entry: gra-MIR8776a

Stem-loop gra-MIR8776a

Accession

MI0027814

Description

Gossypium raimondii gra-MIR8776a precursor miRNA

Sequence

augggggagcaaauaguauucaggggcuuugaaaauuuucuuaugcucacacaaaaucuaugcccaccgacacgcuucaucucauucaagcuacuuggucccgucaauaaccaagaaccaaccacuuauuuggaaaacggaaugcuugaagcaauugugaagaaaaaUUUCAAAGUCCUUGCAUACUAUUUucucacgagu
......(((.(((((((((.((((((((((((((.((((((.....(((((.........((........)).((((((...(((((......((((((..........))))))..((((........))))......)))))..))))))...))))))))))).)))))))))))))).))))))))).)))......

Structure

augggg   c         u              a      uaugc     caaaaucuaugcccaccgacac      ucu     ------------------aagcua      cccg 
      gag aaauaguau caggggcuuugaaa uuuucu     ucaca                      gcuuca   cauuc                        cuuggu    u
      ||| ||||||||| |||||||||||||| ||||||     |||||                      ||||||   |||||                        ||||||     
      cuc UUUAUCAUA GUUCCUGAAACUUU aaaaga     agugu                      cgaagu   guaag                        gaacca    c
ugagca   u         C              a      -----     -------------------uaa      -uc     gcaaaagguuuauucaccaaccaa      auaa

Annotation confidence Not enough data

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Genome context

chr13: 51821770-51821970 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from gra-MIR8776a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature gra-miR8776a

Accession	MIMAT0034219
Description	Gossypium raimondii gra-miR8776a mature miRNA
Sequence	168 - UUUCAAAGUCCUUGCAUACUAUUU - 191
Evidence	experimental Illumina [1]

References

PubMed ID: 24044642
Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
Xue W, Wang Z, Du M, Liu Y, Liu JY
BMC Genomics (2013) 14:629