Stem-loop gra-MIR8776b

Accession

MI0027815

Description

Gossypium raimondii gra-MIR8776b precursor miRNA

Sequence

ggggggagcaaauaguauguagggacuuugaaaauuuucuuaugcucacacaaaaucuaugcacaccgacacccuucaucucauucaagcuaguuggucacgucaauaaccaagaaccgaccauuuauuuagaaaacaaaaugcuugaagccauuguaaagaaaaaUUUCAAAGUCCUUGCAUACUAUUUugucaccagu
...((((..((((((((((((((((((((((((.(((((((.(((...............))).............((.....((((((((((.(((((...((.........))...))))).)))...............))))))).....))..))))))).))))))))))))))))))))))))..)).))...

Structure

ggg  -  gc                        a       augcucacacaaaaucuaugcacaccgacacccuu  ucuca       ---------------   u     acg  aau 
   gg ga  aaauaguauguagggacuuugaaa uuuucuu                                   ca     uucaagc               uag ugguc   uc   a
   || ||  |||||||||||||||||||||||| |||||||                                   ||     |||||||               ||| |||||   ||   a
   cc cu  UUUAUCAUACGUUCCUGAAACUUU aaaagaa                                   gu     aaguucg               auu accag   ag   c
uga  a  gu                        a       ---------------------------------au  uaccg       uaaaacaaaagauuu   u     cca  aac 

Annotation confidence Not enough data

Genome context

chr13: 51864610-51864809 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from gra-MIR8776b

Mature gra-miR8776b

• Accession: MIMAT0034220
• Description: Gossypium raimondii gra-miR8776b mature miRNA
• Sequence: 167 - UUUCAAAGUCCUUGCAUACUAUUU - 190
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629