Stem-loop gra-MIR7484l

Accession

MI0027824

Description

Gossypium raimondii gra-MIR7484l precursor miRNA

Sequence

aaugggcaaauuaguuccuguauguuagauuaaagaguaaacuacauucuguuaaaauuuuuauccauuucuacaauuuguuaaaaacuagcauggcuaauggaauaaccggauaguuauacguggcguacuacuugcaccucaugcuaacguauagggaccaaauuuuaacaguaaaaguggauggaauuuuuaauaaaaggacgaguuugcucUUUGAUCUAAUGUAUGGAGACUAguuugccuau
.(((((((((((((((.((((((((((((((((((((((((((.(.(((((((((((.((((((((((((.(((....((((((((......(((((((.(((.....)))..)))))))..((((....))))(((..(((.((((....)))).)))..))).))))))))))).)))))))))))).)))))))...)))).))))))))))))))))))))))))))).)))))))))))))))

Structure

a               c                          a a    ---       u            c   aauu        ---------------------------------------acuagc       -a   a 
 augggcaaauuaguu cuguauguuagauuaaagaguaaacu c uucu   guuaaaa uuuuauccauuu uac    uguuaaaa                                             auggcua  ugg a
 ||||||||||||||| |||||||||||||||||||||||||| | ||||   ||||||| |||||||||||| |||    ||||||||                                             |||||||  ||| u
 uauccguuugAUCAG GGUAUGUAAUCUAGUUUcucguuuga g agga   uaauuuu aagguaggugaa aug    acaauuuu                                             uauugau  gcc a
-               A                          - c    aaa       u            a   ----        aaaccagggauaugcaaucguacuccacguucaucaugcggugca       ag   a 

Annotation confidence Not enough data

Genome context

chr2: 60358247-60358494 [+]

Mature gra-miR7484l

• Accession: MIMAT0034229
• Description: Gossypium raimondii gra-miR7484l mature miRNA
• Sequence: 216 - UUUGAUCUAAUGUAUGGAGACUA - 238
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629