Stem-loop gra-MIR8780

Accession

MI0027825

Description

Gossypium raimondii gra-MIR8780 precursor miRNA

Sequence

ccuugagagugcgauuuguugccacgucagcaaagcacucugacguggccgugauuugaugacgcggcgcgucccuggggacacgauuuagaccacacgugaauaguacaacggucaaaaauuugaccguugcccccccaacgguaaaaaaaaaaauccuauaaauacccccaccccuuuuuuuuucacaaacaaauccugucucaaauuuccuuucaauuuccucucaauuuccuuucaaauuucucucaaauucauauuuaaucucaauuagcucucaauauccuuuuaaauuucucuuaaaucccuauuuucaaauaauuuuaaaaaauuuugauuuUUUGAUGAUGUGGCAACAAAGCGCugccuugaga
.((((((.(((((.(((((((((((((((.(((((......((((((.(((((.((....)))))))))))))....((((((.(((((........(((........((((((((((....))))))))))........)))((.(((((((((......................))))))))).))....))))).))))))........................................................................((((.((..(((.(((((......((((....))))......))))).)))..)).))))..))))).))))))))))))))).))).)))))))).

Structure

c      a  -   a               g     cacucugacguggccgugauuugaugacgcggcgcgucccuggggacacgauuuagaccacacgugaauaguacaacggucaaaaauuugaccguugcccccccaacgguaaaaaaaaaaauccuauaaauacccccaccccuuuuuuuuucacaaacaaauccugucucaaauuuccuuucaauuuccucucaauuuccuuucaaauuucucucaaauucauauuuaaucucaauuagcuc    u  cc   u     ucucuu    c 
 cuugag gu gcg uuuguugccacguca caaag                                                                                                                                                                                                                                                  ucaa au  uuu aaauu      aaau c
 |||||| || ||| ||||||||||||||| |||||                                                                                                                                                                                                                                                  |||| ||  ||| |||||      ||||  
 gaguuc cg CGC AAACAACGGUGUAGU GUUUu                                                                                                                                                                                                                                                  aguu ua  aaa uuuaa      uuua c
a      -  u   G               A     ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------uu    u  aa   u     uaaacu    u 

Annotation confidence Not enough data

Genome context

chr10: 26309228-26309601 [+]

Mature gra-miR8780

• Accession: MIMAT0034230
• Description: Gossypium raimondii gra-miR8780 mature miRNA
• Sequence: 341 - UUUGAUGAUGUGGCAACAAAGCGC - 364
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629