Stem-loop gra-MIR8743b

Accession

MI0027826

Description

Gossypium raimondii gra-MIR8743b precursor miRNA

Sequence

gccacucaacUUUGGAAAGUUAUAAAAUGGUCAUcuaauuauuuuaauuuugucuuuuucggucaucaguuaguuaauguaaaaauggaagcacccaaaaauucaagauaguugagugaccaaaaaagacaaaauuaaauuguugagugaucauuuuguauuuuucauaguugggugaauaaaaaaaagaaauuuacuaguugagugaccauuuuguaacuuuucauaguugagcgac
..(.(((((((.((((((((((((((((((((((.(((((..(((((((((((((((((.((((((((((((.....((......(((......)))......))...))))))).))))).)))))))))))))))))......(((((...((((......(((((......))))).......))))...)))))))))).)))))))))))))))))))))).))))))).)..

Structure

gc a       U                      c     ---------------------------------------------------------au                 c     -       guuaa  uaaaaa   aa 
  c cucaacU UGGAAAGUUAUAAAAUGGUCAU uaauu                                                           uuuaauuuugucuuuuu gguca ucaguua     ug      ugg  g
  | ||||||| |||||||||||||||||||||| |||||                                                           ||||||||||||||||| ||||| |||||||     ||      |||   
  g gaguuga acuuuucaauguuuuaccagug guuga                                                           aaauuaaaacagaaaaa ccagu aguugau     ac      acc  c
ca c       u                      a     ucauuuaaagaaaaaaaauaaguggguugauacuuuuuauguuuuacuagugaguuguu                 a     g       --aga  uuaaaa   ca 

Annotation confidence Not enough data

Genome context

chr8: 54761476-54761713 [+]

Mature gra-miR8743b

• Accession: MIMAT0034231
• Description: Gossypium raimondii gra-miR8743b mature miRNA
• Sequence: 11 - UUUGGAAAGUUAUAAAAUGGUCAU - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629