Stem-loop gra-MIR8783

Accession

MI0027828

Description

Gossypium raimondii gra-MIR8783 precursor miRNA

Sequence

auuugcuccuUUUGUACGUGGCGGGAGAUAUuggagggaaaaccauuuucuuacaaacguaucucuuagauauuagaaaaauaaaagaccgaauuuaaagauaagauuauuagaaacugguggauuugggccgaaguaaaaaaugcuaauauuuuuuuucccuccaauaucucccgccauauacauaaggagcaaaua
(((((((((((.((((.((((((((((((((((((((((((((((.(((((........(((((.((((((.....................)))))))))))........))))).))))((.......))..((((.....)))).........)))))))))))))))))))))))).)))).))))))))))).

Structure

-           U    C                        -----------------------------------    u     uacaaacg     c      auuagaaaa 
 auuugcuccuU UGUA GUGGCGGGAGAUAUuggagggaaa                                   acca uuucu        uaucu uuagau         a
 ||||||||||| |||| ||||||||||||||||||||||||                                   |||| |||||        ||||| ||||||         u
 uaaacgaggaa acau uaccgcccucuauaaccucccuuu                                   uggu aaaga        auaga aauuua         a
a           u    a                        uuuuuauaaucguaaaaaaugaagccggguuuagg    c     uuauuaga     -      agccagaaa 

Annotation confidence Not enough data

Genome context

chr5: 42120810-42121007 [+]

Mature gra-miR8783

• Accession: MIMAT0034233
• Description: Gossypium raimondii gra-miR8783 mature miRNA
• Sequence: 11 - UUUGUACGUGGCGGGAGAUAU - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629