Stem-loop gra-MIR8787

Accession

MI0027836

Description

Gossypium raimondii gra-MIR8787 precursor miRNA

Sequence

acaucauccaugaucccgccuaauugaaagaagacacaucaucuuugguuugaaaguuuaguccgaauauacauaugauaugaaaaaaaaaagaugauguguUUUUCUUUUAAUUGGACGAGAUAaugaaugaug
.((((((.(((.(((.((.(((((((((((((((((((((((((((..(((...(..(((...............)))..)...)))..)))))))))))).))))))))))))))).)).))).))).))))))

Structure

a      c   g   c  c               -            gg   gaa gu   guccga 
 caucau cau auc cg cuaauugaaagaaga cacaucaucuuu  uuu   a  uua      a
 |||||| ||| ||| || ||||||||||||||| ||||||||||||  |||   |  |||      u
 guagua gua UAG GC GGUUAAUUUUCUUUU guguaguagaaa  aaa   u  agu      a
-      a   A   A  A               u            aa   aag au   auacau 

Annotation confidence Not enough data

Genome context

chr12: 5020967-5021101 [+]

Mature gra-miR8787

• Accession: MIMAT0034241
• Description: Gossypium raimondii gra-miR8787 mature miRNA
• Sequence: 103 - UUUUCUUUUAAUUGGACGAGAUA - 125
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629