Stem-loop gra-MIR8657b

Accession

MI0027841

Description

Gossypium raimondii gra-MIR8657b precursor miRNA

Sequence

uggacuaaauUGUAGUAAUUGUAGAAGUUCAGGGacuauucugcuauuuuuccuuuuccacgaguaucuacaagaucuugauauaaaauaugaaauugcucauuuauuagcauauauuucauuuccaauccauuuuacaauuaauacccuuucauuuuuuaaauuuacauaauuaccccaaacuuuuacaauuuuugcaauuuaauccc
.(((.((((((((((.(((((((((((((..(((..........................((((.((((...)))))))).........(((((((((((........))))...))))))).....................................................)))..))))))))))))).)))))))))).))).

Structure

u   c          U             CA   acuauucugcuauuuuuccuuuuccacgaguaucuacaagaucuugauauaaaau       ---    cau 
 gga uaaauUGUAG AAUUGUAGAAGUU  GGG                                                       augaaau   ugcu   u
 ||| |||||||||| |||||||||||||  |||                                                       |||||||   ||||    
 ccu auuuaacguu uuaacauuuucaa  ccc                                                       uacuuua   acga   u
c   a          u             ac   --auuaauacauuuaaauuuuuuacuuucccauaauuaacauuuuaccuaaccuu       uau    uua 

Annotation confidence Not enough data

Genome context

chr3: 5461726-5461934 [-]

Mature gra-miR8657b

• Accession: MIMAT0034246
• Description: Gossypium raimondii gra-miR8657b mature miRNA
• Sequence: 11 - UGUAGUAAUUGUAGAAGUUCAGGG - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629