Stem-loop gra-MIR8717

Accession

MI0027843

Description

Gossypium raimondii gra-MIR8717 precursor miRNA

Sequence

aaacaaaaauuagucuuggaucagaacaacuaauuccauaaucgggcaacgauuugaaauuguaauucaauuauacuacgaagguaacaacgauaucaaagauugcuuuuggcagauacuucgaugacauaaguauuuauggcauguuuguagccauuugucguuaugguacauuuguauccauaucuacuuauaccauugaaguauaugccaaaagcaaucucugauaucgcuauugccuucguuguauaauuaaauugccauuugaaaccauugccugguuauggcAUUGGUUGUUCUGAUUCGAGGCUAauuu
......((((((((((((((((((((((((((((.((((((((((((((.(.(((.((((.((((((.((((((((.((((((((((...((((((((.(((((((((((((((.(((((((((((..(((((((..(((((.(((..((((.((((........))))))))....))))))))..)))))))..))))))))))).))))))))))))))).))))))))...)))))))))).)))))))).)))))).)))).))).).)))))))))))))).))))))))))))))))))))))))))))

Structure

aaacaa                            u              c a   g    u      c        u          caa        a               g           ac       uu     c   --uu    g    uug 
      aaauuagucuuggaucagaacaacuaau ccauaaucgggcaa g uuu aaau guaauu aauuauac acgaagguaa   cgauauca agauugcuuuuggca auacuucgaug  auaagua  uaugg aug    ugua ccau   u
      |||||||||||||||||||||||||||| |||||||||||||| | ||| |||| |||||| |||||||| ||||||||||   |||||||| ||||||||||||||| |||||||||||  |||||||  ||||| |||    |||| ||||    
      uuuaAUCGGAGCUUAGUCUUGUUGGUUA gguauugguccguu c aaa uuua cguuaa uuaauaug ugcuuccguu   gcuauagu ucuaacgaaaaccgu uaugaaguuac  uauucau  auacc uau    acau ggua   c
------                            c              a c   g    c      a        u          auc        c               a           ca       cu     -   guuu    -    uug 

Annotation confidence Not enough data

Genome context

chr11: 5994050-5994365 [+]

Mature gra-miR8717

• Accession: MIMAT0034248
• Description: Gossypium raimondii gra-miR8717 mature miRNA
• Sequence: 289 - AUUGGUUGUUCUGAUUCGAGGCUA - 312
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629