Stem-loop gra-MIR8781b

Accession

MI0027849

Description

Gossypium raimondii gra-MIR8781b precursor miRNA

Sequence

uucuaucaguuugguccucaaacuuccuaaccaaagcuuuuagcuuuuaaaauagaggcauuucacaucuauuaauuguuuuauuuauaguugaaauuaucuaauucgguacauaacccuuuuuuauauuuuuaauaaauuagugcuagaaauuaacuaaacaccauuaaaaaauaauugaaaauaaaauuuuaaauauauaauauauaauauauguggaaugugucuguuuuaaaagcugaaagcUUUGAUUAGGAAGUUUGAGGAUCAaacugauaga
.(((((((((((((((((((((((((((((.(((((((((((((((((((((((((.(((((((((((.(((((..(((.((((.(((..((((((((.........(((.....))).....((((.((((((((...(((((...........))))).....))))))))))))..........))))))))))).)))).)))))))).))))))))))).))))))))))))))))))))))))).)))))))))))))))))))))))))))))

Structure

u                             c                         g           c     au   u    u   ag        aucuaauucgguacauaacccuuuu    a        --aaa     gcua 
 ucuaucaguuugguccucaaacuuccuaa caaagcuuuuagcuuuuaaaauaga gcauuucacau uauua  ugu uuau uau  uugaaauu                         uuau uuuuuaau     uuagu    g
 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||  ||| |||| |||  ||||||||                         |||| ||||||||     |||||    a
 agauagucaaACUAGGAGUUUGAAGGAUU GUUUcgaaagucgaaaauuuugucu uguaaggugua auaau  aua aaua aua  aauuuuaa                         aaua aaaaauua     aauca    a
-                             A                         g           u     --   u    u   --        ---------------aauaaaaguu    -        ccaca     auua 

Annotation confidence Not enough data

Genome context

chr4: 33302477-33302756 [-]

Mature gra-miR8781b

• Accession: MIMAT0034254
• Description: Gossypium raimondii gra-miR8781b mature miRNA
• Sequence: 247 - UUUGAUUAGGAAGUUUGAGGAUCA - 270
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629