Stem-loop gra-MIR8739

Accession

MI0027852

Description

Gossypium raimondii gra-MIR8739 precursor miRNA

Sequence

guauacauggcaugcuauguguaacuguuuuguuauuuuaucagucacaccaaauuuuaauauuagaaauggaugggacuuuuaauagaaauaaccaguuuacucuuuaauccaauguauagagacuaauuuauuuauuuuuugaguaaacgagguaaaaugaaauuuggcuccuaauacaaggacuuccaugcaugcuuuuuuuuuuuuuuuaccuucaauaaugacaauuuaauauuccuuaagaaaaguuugguaaaaauaucaugaaggucuuugcaauagaugucaaauugcauuuugccccuucuacuaaaaaaugaguaaauuugucccuguacauuagauuaaauaguaaaauggucuuuuauguuaaaaguuucauccaauucuacuauuaaaaauuggcauggcuguuagaaUAACUAAAUAGUGACACGUGGCAUggcaugugua
.((((((((.((((((((((((.(((((((.(((((((((.((((((..((((.((((((((.(((((.((((((((((((((((((.(((..((((.((((((.(((((((.(((((((((.(((.((((((((((((((((.((((...(.(((((((((.((((((((..(((...(((((((((.((((.(((...........((((((((......................................))))))))))))))).)))))))))...)))..)))))))).))))))))).)...)))))))))))))))))))).))).))))))))).))))))).)))))).))))..))).)))))))))))))))))).))))).)))))))).))))..)))))).))))))))).))))))).)))))))))))).))))))))

Structure

g        g            a       u         u      ca    a        u     a                  g   ua    g      c       c         a   u                g    aac a         a        uc   aua         c    c   cuuuuuuuuuu        uucaauaaugacaauuua 
 uauacaug caugcuaugugu acuguuu guuauuuua caguca  ccaa uuuuaaua uagaa uggaugggacuuuuaaua aaa  acca uuuacu uuuaauc aauguauag gac aauuuauuuauuuuuu agua   g gguaaaaug aauuuggc  cua   caaggacuu caug aug           uuuuuacc                  a
 |||||||| |||||||||||| ||||||| ||||||||| ||||||  |||| |||||||| ||||| |||||||||||||||||| |||  |||| |||||| ||||||| ||||||||| ||| |||||||||||||||| ||||   | ||||||||| ||||||||  |||   ||||||||| |||| |||           ||||||||                   
 auguguac gUACGGUGCACA UGAUAAA CAAUaagau gucggu  gguu aaaauuau aucuu accuacuuugaaaauugu uuu  uggu aaauga aaauuag uuacauguc cug uuaaaugaguaaaaaa ucau   c ccguuuuac uuaaacug  gau   guuucugga guac uau           aaaaaugg                  u
-        g            G       U         u      ac    a        c     a                  a   uc    a      u       a         c   u                -    cuu c         g        ua   aac         a    -   -----------        uuugaaaagaauuccuua 

Annotation confidence Not enough data

Genome context

chr4: 61702568-61703023 [-]

Mature gra-miR8739

• Accession: MIMAT0034257
• Description: Gossypium raimondii gra-miR8739 mature miRNA
• Sequence: 423 - UAACUAAAUAGUGACACGUGGCAU - 446
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629