miRBase entry: gra-MIR8718

Stem-loop gra-MIR8718


Accession
MI0027856
Description
Gossypium raimondii gra-MIR8718 precursor miRNA


Sequence

132405 reads, 25842.0 reads per million, 13 experiments
uaaggaguugAUUUUGGAAGAAUUUCAGCUGguugugccaccaaugguagaacagcugcggguuuuauugguacguuggugacucaACCGGUUGGAACUCUUCCAAAAUcaacuccggg
...((((((((((((((((((.(((((((((((((.(.(((((((((((((((........))))))).....)))))))).).))))))))))))).))))))))))))))))))...

Structure
uaa                  A             u c        -----       agc 
   ggaguugAUUUUGGAAGA UUUCAGCUGguug g caccaaug     guagaac   u
   |||||||||||||||||| ||||||||||||| | ||||||||     |||||||    
   ccucaacUAAAACCUUCU AAGGUUGGCCAac c gugguugc     uauuuug   g
ggg                  C             u a        auggu       ggc 


Annotation confidence Medium
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Genome context
chr6: 2333245-2333363 [-]

Database links

Mature gra-miR8718-5p

Accession MIMAT0034261
Description Gossypium raimondii gra-miR8718-5p mature miRNA
Sequence 11 - AUUUUGGAAGAAUUUCAGCUG - 31
Evidence experimental
Illumina [1]

Mature gra-miR8718-3p

Accession MIMAT0055555
Description Gossypium raimondii gra-miR8718-3p mature miRNA
Sequence 87 - ACCGGUUGGAACUCUUCCAAAAU - 109
Evidence experimental
unknown

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629