Stem-loop gra-MIR8689

Accession

MI0027860

Description

Gossypium raimondii gra-MIR8689 precursor miRNA

Sequence

guugaggaguAGAGGUGCUCAUGGGCUGGGUCGGgccaggccccaaaaaauucagcucgaguccuaggccagagcucaacucgacucaaaauaugggcuugaaauuuuguccaggcccggcccaagaaaaaaaucuuaagcccgagcccggcccgacccauuuuuuaaauaaaacaccaaaaauuuauuuuaaaauaaaaaauaaaaaaauauuuuaaaaauaauaaaaauauauauauuuauuauuuauucgggccgggcagagcagggcccgggccaaaaaaguagugcccgaggcccgacccauuuuuuaaacaggccucguuuuuuuugcccaagcucauauuucgagccuauauuuuuauccgaacccucucauauuucggacuggccgucggaccaggccgggucgggccgcccgacccaugaucaccucuauugaggagucaauuaaugaauauaucccaaa
(((((..((((((((((.(((((((.((((.(((.((.(((((...........(((.(.((((..((((((((.((.....)))))((((((((((((((((((...((...((((((((..((((......))))..)))...(((((((((((.....((((.(((((((..........))))))).))))...((((((......))))))..((((((((((.((....)).))))))))))..)))))))))))......))))).((((.(((((((.......(((((((..................)))))))))))))).))))..))....))))))))))))))))))..((((((...........)))))).)))))...))))).))).))))))).))))))).))))))).))))))))))......)))))..................

Structure

------------------     ----gg          C       C    U   g  a     caaaaaauuca   c a    -ua     ----------gagcucaacucgacuc                  -uuu  ccaggcccggcccaagaaaaaaaucuuaagcccgagcccggcccgacccauuuuuuaaauaaaacaccaaaaauuuauuuuaaaauaaaaaauaaaaaaauauuuuaaaaauaauaaaaauauauauauuuauuauuuauucgggccgggcagagcagggccc    c       uagugcc       cgacccau 
                  guuga      aguAGAGGUG UCAUGGG UGGG CGG cc ggccc           gcu g gucc   ggcca                          aaaauaugggcuugaaau    gu                                                                                                                                                                   gggc aaaaaag       cgaggcc        u
                  |||||      |||||||||| ||||||| |||| ||| || |||||           ||| | ||||   |||||                          ||||||||||||||||||    ||                                                                                                                                                                   |||| |||||||       |||||||         
                  uaacu      uuaucuccac aguaccc gccc gcc gg cuggg           cgg c cagg   ccggu                          uuuuauauccgagcuuua    cg                                                                                                                                                                   cccg uuuuuuu       gcuccgg        u
aaacccuauauaaguaau     gaggag          u       a    -   g  -     ----------c   a -    cug     caggcuuuauacucucccaagccuau                  uacu  -----------------------------------------------------------------------------------------------------------------------------------------------------------------aa    u       -------       acaaauuu 

Annotation confidence Not enough data

Genome context

chr9: 30068577-30069045 [+]

Mature gra-miR8689

• Accession: MIMAT0034265
• Description: Gossypium raimondii gra-miR8689 mature miRNA
• Sequence: 11 - AGAGGUGCUCAUGGGCUGGGUCGG - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629