miRBase entry: gra-MIR7502f

Stem-loop gra-MIR7502f


Accession
MI0027862
Description
Gossypium raimondii gra-MIR7502f precursor miRNA


Sequence

1985 reads, 435.0 reads per million, 13 experiments
auuaaaaauuuaaucuauuucuauuguuaAAAAUUGACGUGGUUAAUAGAAUAAucaaacaauuacacguguuguguuacauguaccucauuaugauguauagggaccaaauUUUAGCAGUAGAAAUAGAUGAucuuuuuaac
.(((((((....((((((((((((((((((((.((((((((........................)))))(((.(..(((((.............)))))..).)))))).))))))))))))))))))))....))))))).

Structure
a       uuua                    A   -------------------------------------     GUUAAUAGAAU 
 uuaaaaa    aucuauuucuauuguuaAAA UUG                                     ACGUG           A
 |||||||    |||||||||||||||||||| |||                                     |||||            
 aauuuuu    UAGAUAAAGAUGACGAUUUu aac                                     ugcac           A
c       cuAG                    a   cagggauauguaguauuacuccauguacauuguguug     auuaacaaacu 


Annotation confidence Low
Do you think this miRNA is real?

Genome context
chr7: 57294600-57294742 [-]

Database links

Mature gra-miR7502f-5p

Accession MIMAT0055558
Description Gossypium raimondii gra-miR7502f-5p mature miRNA
Sequence 30 - AAAAUUGACGUGGUUAAUAGAAUAA - 54
Evidence experimental
unknown

Mature gra-miR7502f-3p

Accession MIMAT0034267
Description Gossypium raimondii gra-miR7502f-3p mature miRNA
Sequence 113 - UUUAGCAGUAGAAAUAGAUGA - 133
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24044642
    Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
    Xue W, Wang Z, Du M, Liu Y, Liu JY
    BMC Genomics (2013) 14:629