Stem-loop cfa-mir-6529

Accession

MI0027868

Description

Canis lupus familiaris cfa-mir-6529 precursor miRNA

Sequence

62939 reads, 158.0 reads per million, 80 experiments

acaugagaaaaaccuguucucuuGAGAGAUCAGAGGCGCAGAGUgcgucaaugucaaugaagCCUGUGCCUUUUACCUCUUUAAgagcgcacgguuucauucugcuucu
.....((((((((((((.((((((((((...((((((((((...((.(((.......))).))))))))))))...))).))))))).))).)))))..))))......

Structure

-acaug    --     -   u       -   AUC          AGU  g   au 
      agaa  aaacc ugu cucuuGA GAG   AGAGGCGCAG   gc uca  g
      ||||  ||||| ||| ||||||| |||   ||||||||||   || |||  u
      ucuu  uuugg acg gagAAUU CUC   UUUCCGUGUC   Cg agu  c
ucuucg    ac     c   c       U   CAU          ---  a   aa 

Annotation confidence High

Genome context

33: 23889815-23889923 [-]

Mature cfa-miR-6529-5p

• Accession: MIMAT0051966
• Description: Canis lupus familiaris cfa-miR-6529-5p mature miRNA
• Sequence: 24 - GAGAGAUCAGAGGCGCAGAGU - 44
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-6529-3p

• Accession: MIMAT0034278
• Description: Canis lupus familiaris cfa-miR-6529-3p mature miRNA
• Sequence: 63 - CCUGUGCCUUUUACCUCUUUAA - 84
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545