Stem-loop cfa-mir-8792

Accession

MI0027872

Description

Canis lupus familiaris cfa-mir-8792 precursor miRNA

Sequence

203 reads, 5.0 reads per million, 31 experiments

gagaguacuguuucugauucuuucauuuguguuguggugaguucuuccUUCUAGUCAUUUUGCUCAGUGCAGAGUGgcuguaugagcaggcugaguuaagaauaucAACCACGACCUAAGUAAAUUUCACCCUaagugauucugc
.((((((((.....(((...(((.(((((.((((((((((((((((..(((.((((....((((((.(((((.....))))))))))))))))))..)))))).)).)))))))).))))))))..))).....))).)))))..

Structure

-g     -   guuuc   uuc   c     u        -  -      cc   U    AUUU      G     A 
  agagu acu     uga   uuu auuug guuguggu ga guucuu  UUC AGUC    UGCUCA UGCAG G
  ||||| |||     |||   ||| ||||| |||||||| || ||||||  ||| ||||    |||||| ||||| U
  ucuua uga     ACU   AAA UGAAU CAGCACCA cu uaagaa  gag ucgg    acgagu auguc G
cg     g   aUCCC   -UU   -     C        A  a      uu   -    ----      -     g 

Annotation confidence Low

Genome context

30: 3333391-3333535 [-]

Mature cfa-miR-8792-5p

• Accession: MIMAT0051967
• Description: Canis lupus familiaris cfa-miR-8792-5p mature miRNA
• Sequence: 49 - UUCUAGUCAUUUUGCUCAGUGCAGAGUG - 76
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-8792-3p

• Accession: MIMAT0034282
• Description: Canis lupus familiaris cfa-miR-8792-3p mature miRNA
• Sequence: 107 - AACCACGACCUAAGUAAAUUUCACCCU - 133
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545